Biology
1D 1H NMR data processing
1D 1H NMR is a commonly applied to metabolomic studies, being well suited to untargeted analysis of complex biofluids. It
Martin Fitzpatrick
Releases
Wooey
Simple, automated web UIs for Python scripts
Data Science
Getting Started with Pathomx
This is quick start-up guide for new users of Pathomx. Following it should give you everything that you need
Software
Gremlins in the Machine
Creating custom tools for the Pathomx data analysis platform
Python
PyQt5 support in Matplotlib
My pull-request for matplotlib to add PyQt5 support has been accepted and merged, meaning PyQt5 support will be available
Python
Automatic phase correction of NMR spectra
This notebook demonstrates automatic phase correction algorithms implemented for nmrglue. Two standard algorithms are implemented:
* ACME algorithm by Chen Li
MATLAB
NMRLab 1D NMR processing (MATLAB)
This notebook uses a subset of the available processing features in NMRLab (+Metabolab) to process 1D NMR spectra. The output
Snippets (MATLAB)
This notebook contains snippets of code that are useful when working with MATLAB in IPython Notebooks.
Tutorials
MetaboHunter 1D NMR Identification (Python Interface) Demo
MetaboHunter is a web service for automated assignment of 1D raw, bucketed or peak picked NMR spectra. Identification is performed
Releases
MetaboHunter Interface
1D NMR Metabolite Identification from Python
Releases
BioCyc (API)
Python interface to the BioCyc Web API
Releases
BioCyc Interface Demo
This notebook is a quick demo of a BioCyc Web API I've released for Python. While incomplete the
Biology
Measuring cell fluorescence using ImageJ
Determining the level of cellular fluorescence from fluorescence microscopy images in ImageJ
Releases
QtIPy
QtIPy — The data automator!
Releases
mplstyler
A simple API to keep line and marker styles consistent throughout plots
Python
Analyzing public GEO datasets with Pathomx
This short demo shows analysis of a publicly available GEO dataset using Pathomx, with a workflow build using the new
Python
Pathomx: Example Analysis
Short demo of an experimental analysis of metabolomic (NMR) data using Pathomx. Metabolomic test dataset produced from THP-1 cells
Releases
Pathomx
Speed up your analysis with interactive data workflows built on Python.
books,now,hash-timeline,hash-gallery