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# Pathomx: Example Analysis
- URL: https://mfitzp.ghost.io/metapath-example-analysis/
- Published: 2013-11-13T00:00:00.000Z
- Updated: 2024-04-02T21:14:20.000Z
- Author: Martin Fitzpatrick
- Tags: Python, Biology, #Import 2026-08-24 14:26

Short demo of an experimental analysis of metabolomic (NMR) data using Pathomx. Metabolomic test dataset produced from THP-1 cells grown under normal and hypoxic conditions. Spectra (2D 1H JRES) have been pre-processed and quantified using the [BML-NMR](http://bml-nmr.org/?ref=mfitzp.ghost.io) service.

The video shows an example analysis from processed data through to metabolic pathways and PLS-DA outputs.

Pathomx is an open-source workflow-based scientific analysis application. Source code is available [here](https://github.com/mfitzp/pathomx?ref=mfitzp.ghost.io) with packaged binaries and paper to follow shortly. More information is available [on this site](http://martinfitzpatrick.name/tag/pathomx?ref=mfitzp.ghost.io).